1HOQ
CHIMERIC RNA/DNA HAIRPIN
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | DQF-COSY | 1mM hairpin | D2O | 7.0 | 1 atm | 293 | ||
2 | 2D-NOESY | 1mM hairpin | D2O | 7.0 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures were refined by NMR-restrained molecular dynamics (14 ps, 300-1000 K) with final energy minimization | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | (the hairpin stem structure closest to the average) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homo- and heteronuclear techniques: 2D-NOESY, DQF-COSY, TOCSY, H,C-HMQC, H,P-HetCOSY |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.843 | Brunger |
2 | data analysis | X-PLOR | Brunger |