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Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 20% POLYETHYLENE GLYCOL 4000, 50 MM TRIS PH 7.0, 0.2 % SODIUM AZIDE
Crystal Properties Matthews coefficient Solvent content 3.06 59.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.83 α = 90 b = 50.83 β = 90 c = 140.29 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MACSCIENCE MIRRORS 1998-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE NONIUS FR391
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 22.4 94.8 0.069 13.2 2.52 17239 28.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 85.2 0.294 3.3 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.3 15 17184 1693 95.4 0.207 0.199 0.283 RANDOM 35.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.8 p_staggered_tor 19.9 p_planar_tor 9.8 p_scangle_it 2.92 p_mcangle_it 2.541 p_scbond_it 1.864 p_mcbond_it 1.642 p_multtor_nbd 0.257 p_singtor_nbd 0.191 p_xyhbond_nbd 0.187
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.8 p_staggered_tor 19.9 p_planar_tor 9.8 p_scangle_it 2.92 p_mcangle_it 2.541 p_scbond_it 1.864 p_mcbond_it 1.642 p_multtor_nbd 0.257 p_singtor_nbd 0.191 p_xyhbond_nbd 0.187 p_chiral_restr 0.148 p_planar_d 0.074 p_angle_d 0.043 p_plane_restr 0.0244 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHARP phasing