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recombinant mouse L-chain ferritin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 HANGING DROP VAPOR DIFFUSION: DROPS MADE UP OF 3MICROL OF PROTEIN (3.5 MG/ML) IN 20 MM TRIS PH 7.4 AND 3 MICROL OF PRECIPITANT SOLUTION COMPOSED OF 0.92 M AMMONIUM SULFATE, 0.4% CDSO4 AND 3 MM NAN3
Crystal Properties Matthews coefficient Solvent content 2.6 52.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.82 α = 90 b = 180.82 β = 90 c = 180.82 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH COLLIMATOR 1999-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE NONIUS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 95.7 0.071 9.3 4.9 32400 11.83
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 83.8 0.38 1.9 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DAT 1.6 14 32339 1637 95.7 0.16 0.1632 0.22 0.1899 RANDOM 13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 20 p_staggered_tor 13.9 p_scangle_it 4.7 p_scbond_it 3.5 p_planar_tor 3.3 p_mcangle_it 2.25 p_mcbond_it 1.85 p_xhyhbond_nbd 0.5 p_multtor_nbd 0.285 p_singtor_nbd 0.169
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 20 p_staggered_tor 13.9 p_scangle_it 4.7 p_scbond_it 3.5 p_planar_tor 3.3 p_mcangle_it 2.25 p_mcbond_it 1.85 p_xhyhbond_nbd 0.5 p_multtor_nbd 0.285 p_singtor_nbd 0.169 p_xyhbond_nbd 0.11 p_chiral_restr 0.096 p_planar_d 0.027 p_angle_d 0.022 p_plane_restr 0.019 p_bond_d 0.009 p_angle_deg p_hb_or_metal_coord p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1340 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing