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The crystal structure of human alanine:glyoxylate aminotransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 CRYSTALS WERE GROWN BY THE MICROBATCH METHOD. 1UL OF PROTEIN SOLUTION (15MG/ML ) WAS ADDED TO 1UL OF PRECIPITANT (2.5% (V/V) 2-PROPANOL, 10% PEG4K, 0.1M NAHEPES PH 7.5).
Crystal Properties Matthews coefficient Solvent content 2.39 58.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.33 α = 90 b = 90.33 β = 90 c = 142.01 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.9 0.074 6.9 7.7 21044 25.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.58 99.9 0.177 3.8 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.5 47.49 20672 1016 98.3 0.231 0.231 0.2257 0.286 RANDOM 42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.42 8.42 -16.84
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_scangle_it 3.09 c_mcangle_it 2.29 c_scbond_it 2.27 c_angle_deg 1.7 c_mcbond_it 1.39 c_improper_angle_d 1.13 c_bond_d 0.014 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.9 c_scangle_it 3.09 c_mcangle_it 2.29 c_scbond_it 2.27 c_angle_deg 1.7 c_mcbond_it 1.39 c_improper_angle_d 1.13 c_bond_d 0.014 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2953 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 57
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling SOLVE/RESOLVE phasing