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Crystal structure of the di-tetraheme cytochrome c3 from Desulfovibrio gigas at 1.2 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 SALTING OUT FROM A PROTEIN SOLUTION IN TRIS/MALEATE PH=6.5, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.3 47.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.67 α = 90 b = 56.67 β = 90 c = 94.17 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MARRESEARCH MIRRORS 1997-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 26.44 98.7 0.097 16.3 4.9 104411
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.21 95.6 0.437 2.8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIRECT METHODS THROUGHOUT 1.2 26.5 104729 3620 98.9 0.1312 0.1303 0.1344 0.1568 SHELLS
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 19 2286
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.103 s_non_zero_chiral_vol 0.079 s_zero_chiral_vol 0.078 s_similar_adp_cmpnt 0.056 s_angle_d 0.032 s_from_restr_planes 0.0292 s_anti_bump_dis_restr 0.025 s_bond_d 0.014 s_similar_dist 0.014 s_rigid_bond_adp_cmpnt 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1650 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 356
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing