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Structure of Cellvibrio cellulosa alpha-L-arabinanase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other TRICLINIC STRUCTURE PREVIOUSLY SOLVED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 10% PEG8000 100MM TRIS-HCL PH8.0, 20% GLYCEROL, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.6 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.078 α = 90 b = 90.078 β = 90 c = 177.217 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 20 99.9 0.056 29.4 6.77 27420
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 99.9 0.565 3.27 6.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT TRICLINIC STRUCTURE PREVIOUSLY SOLVED 2.05 20 26420 869 99.9 0.207 0.205 0.2103 0.245 RANDOM 20.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.93 1.47 2.93 -4.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.931 r_scangle_it 2.422 r_angle_other_deg 1.844 r_scbond_it 1.614 r_angle_refined_deg 1.416 r_mcangle_it 1.031 r_mcbond_it 0.591 r_symmetry_hbond_refined 0.448 r_symmetry_vdw_other 0.321 r_nbd_other 0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.931 r_scangle_it 2.422 r_angle_other_deg 1.844 r_scbond_it 1.614 r_angle_refined_deg 1.416 r_mcangle_it 1.031 r_mcbond_it 0.591 r_symmetry_hbond_refined 0.448 r_symmetry_vdw_other 0.321 r_nbd_other 0.248 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.144 r_xyhbond_nbd_refined 0.143 r_nbtor_other 0.09 r_chiral_restr 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2544 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing