☰ Navigation Tabs
Mutant D189A of Family 10 polysaccharide lyase from Cellvibrio cellulosa in complex with trigalaturonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 CRYSTALS OF PEL10ACM WERE GROWN BY VAPOUR-PHASE DIFFUSION USING THE HANGING-DROP METHOD WITH SCREENING AS DESCRIBED BY BRZOZOWSKI & WALTON (2001 [[BRZOZOWSKI, A.M. & WALTON, J.(2001). J. APPL. CRYST. 34, 97-101.]] ). THE PROTEIN CONCENTRATION WAS 30 MG ML-1 IN NA MES BUFFER PH 5.2 CONTAINING KSCN AT A CONCENTRATION OF 200 MM. THE PRECIPITANT WAS 20%(W/V) MONOMETHYL POLYETHYLENEGLYCOL 2000. 25MM CACL2 AND 20MM TRIGALACTURONIC ACID WERE ALSO ADDED.
Crystal Properties Matthews coefficient Solvent content 1.8 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.428 α = 90 b = 54.917 β = 90 c = 47.185 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2001-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 79.2 0.073 13.1 3.5 14154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 29.3 0.32 2.1 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.05 52.7 13414 705 79.2 0.176 0.173 0.1803 0.228 RANDOM 17.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 0.01 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.377 r_dihedral_angle_4_deg 20.694 r_dihedral_angle_3_deg 15.148 r_dihedral_angle_1_deg 5.248 r_scangle_it 2.99 r_scbond_it 1.882 r_angle_refined_deg 1.316 r_mcangle_it 1.076 r_mcbond_it 0.586 r_symmetry_vdw_refined 0.269
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.377 r_dihedral_angle_4_deg 20.694 r_dihedral_angle_3_deg 15.148 r_dihedral_angle_1_deg 5.248 r_scangle_it 2.99 r_scbond_it 1.882 r_angle_refined_deg 1.316 r_mcangle_it 1.076 r_mcbond_it 0.586 r_symmetry_vdw_refined 0.269 r_symmetry_hbond_refined 0.264 r_nbd_refined 0.209 r_metal_ion_refined 0.171 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2504 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling