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Family 10 polysaccharide lyase from Cellvibrio cellulosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 291 CRYSTALS OF PEL10ACM WERE GROWN BY VAPOUR-PHASE DIFFUSION USING THE HANGING-DROP METHOD WITH SCREENING AS DESCRIBED BY BRZOZOWSKI & WALTON (2001 [[BRZOZOWSKI, A.M. & WALTON, J. (2001). J. APPL. CRYST. 34, 97-101.]] ). THE PROTEIN CONCENTRATION WAS 30 MG ML-1 IN NA MES BUFFER PH 5.2 CONTAINING KSCN AT A CONCENTRATION OF 200 MM. THE PRECIPITANT WAS 20%(W/V) MONOMETHYL POLYETHYLENEGLYCOL 2000 AND CRYSTALS APPEARED AFTER 2 D AT 291 K
Crystal Properties Matthews coefficient Solvent content 1.8 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.67 α = 90 b = 106.113 β = 91.95 c = 55.365 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 1999-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 50 86.8 0.058 17.9 3.3 112216
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.32 1.35 35.4 0.329 2.4 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.32 15.71 106610 5557 86.5 0.132 0.13 0.1452 0.162 RANDOM 12.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 -0.48 -0.34 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.404 r_dihedral_angle_4_deg 17.625 r_dihedral_angle_3_deg 13.753 r_dihedral_angle_1_deg 5.37 r_scangle_it 3.168 r_scbond_it 2.126 r_angle_other_deg 1.916 r_mcangle_it 1.599 r_angle_refined_deg 1.365 r_mcbond_it 1.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.404 r_dihedral_angle_4_deg 17.625 r_dihedral_angle_3_deg 13.753 r_dihedral_angle_1_deg 5.37 r_scangle_it 3.168 r_scbond_it 2.126 r_angle_other_deg 1.916 r_mcangle_it 1.599 r_angle_refined_deg 1.365 r_mcbond_it 1.029 r_symmetry_vdw_other 0.301 r_nbd_other 0.275 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.189 r_symmetry_hbond_refined 0.186 r_xyhbond_nbd_refined 0.161 r_nbtor_other 0.091 r_chiral_restr 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5127 Nucleic Acid Atoms Solvent Atoms 835 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing