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Carbohydrate binding module family29 complexed with mannohexaose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NATIVE CBM29 SOLVED BY MAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 3.0M AMMONIUM SULFATE, 10MM MANNOHEXAOSE, 25% GLYCEROL, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.2 44.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.619 α = 90 b = 43.176 β = 93.85 c = 60.731 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 20 99 0.085 13.8 3.3 20412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.57 92.7 0.229 3.86 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NATIVE CBM29 SOLVED BY MAD 1.51 20 19556 1062 98.1 0.156 0.154 0.179 RANDOM 7.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.47 -0.28 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.329 r_scangle_it 3.608 r_angle_other_deg 3.124 r_scbond_it 2.417 r_angle_refined_deg 1.765 r_mcangle_it 1.513 r_mcbond_it 0.859 r_symmetry_vdw_other 0.378 r_symmetry_hbond_refined 0.262 r_nbd_other 0.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.329 r_scangle_it 3.608 r_angle_other_deg 3.124 r_scbond_it 2.417 r_angle_refined_deg 1.765 r_mcangle_it 1.513 r_mcbond_it 0.859 r_symmetry_vdw_other 0.378 r_symmetry_hbond_refined 0.262 r_nbd_other 0.252 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.107 r_nbtor_other 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1110 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing