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Atomic resolution structure of Micrococcus Lysodeikticus catalase complexed with NADPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 pH 5.20
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.7 α = 90 b = 106.7 β = 90 c = 106.25 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RAXIS 1994-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.744 74.536 87.2 0.048 24.4 7.4 457407
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.74 74.54 52087 2758 87.2 0.111 0.1274 0.138 0.1468 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.403 r_scbond_it 2.685 r_mcangle_it 1.574 r_angle_other_deg 1.563 r_dihedral_angle_3_deg 0.948 r_mcbond_it 0.849 r_symmetry_vdw_other 0.331 r_nbd_other 0.264 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.192
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.403 r_scbond_it 2.685 r_mcangle_it 1.574 r_angle_other_deg 1.563 r_dihedral_angle_3_deg 0.948 r_mcbond_it 0.849 r_symmetry_vdw_other 0.331 r_nbd_other 0.264 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.181 r_symmetry_hbond_refined 0.172 r_chiral_restr 0.098 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3981 Nucleic Acid Atoms Solvent Atoms 568 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling