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Substrate distorsion by beta-mannanase from Pseudomonas cellulosa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J9Y PDB ENTRY 1J9Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100MM TRIS PH7.5, 26% PEG550, 9MM ZNSO4, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.69 53.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.192 α = 90 b = 93.192 β = 90 c = 54.343 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2001-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99.4 0.061 20.37 3.48 50905
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 96.4 0.172 6.75 2.57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J9Y 1.7 20 48658 2609 99.6 0.145 0.144 0.1589 0.17 RANDOM 14.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.47 0.94
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.567 r_scbond_it 2.262 r_dihedral_angle_3_deg 1.995 r_angle_other_deg 1.723 r_mcangle_it 1.567 r_mcbond_it 0.957 r_nbtor_other 0.496 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.226 r_nbd_other 0.2
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.567 r_scbond_it 2.262 r_dihedral_angle_3_deg 1.995 r_angle_other_deg 1.723 r_mcangle_it 1.567 r_mcbond_it 0.957 r_nbtor_other 0.496 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.226 r_nbd_other 0.2 r_symmetry_vdw_other 0.172 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.122 r_metal_ion_refined 0.109 r_symmetry_hbond_refined 0.108 r_xyhbond_nbd_other 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3012 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing