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MopII from Clostridium pasteurianum (apo2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GUG PDB ENTRY 1GUG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 2M NACL, 10% POLYETHYLENE GLYCOL 6000, pH 7.60
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.961 α = 90 b = 82.328 β = 93.44 c = 57.031 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2001-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 95.5 0.067 18.9 4 55394
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 85.4 0.248 4.2 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GUG 1.5 25 52609 2775 100 0.181 0.178 0.1794 0.222 0.2188 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.119 r_scbond_it 3.573 r_mcangle_it 2.454 r_angle_other_deg 1.545 r_mcbond_it 1.443 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.208 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.119 r_scbond_it 3.573 r_mcangle_it 2.454 r_angle_other_deg 1.545 r_mcbond_it 1.443 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.208 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2886 Nucleic Acid Atoms Solvent Atoms 396 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing