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MopII from Clostridium pasteurianum complexed with molybdate (partial)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GUG PDB ENTRY 1GUG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 95 MM HEPES PH 7.5, 27% POLYETHYLENE GLYCOL 400, 5% GLYCEROL, 190 MM CACL2
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.81 α = 90 b = 78.38 β = 90.01 c = 95.24 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2001-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 20 97.4 0.055 16.7 2.8 36043
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.9 98.8 0.336 3.7 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GUG 1.83 19.61 34219 1815 100 0.216 0.215 0.2153 0.248 0.2482 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.454 r_scbond_it 3.772 r_mcangle_it 2.084 r_angle_other_deg 1.908 r_mcbond_it 1.176 r_chiral_restr 0.474 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.223 r_symmetry_vdw_refined 0.214 r_xyhbond_nbd_refined 0.116
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.454 r_scbond_it 3.772 r_mcangle_it 2.084 r_angle_other_deg 1.908 r_mcbond_it 1.176 r_chiral_restr 0.474 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.223 r_symmetry_vdw_refined 0.214 r_xyhbond_nbd_refined 0.116 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2886 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing