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CBM4 structure and function
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GU3 PDB ENTRY 1GU3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 2.0M AMMONIUM SULFATE 100MM SODIUM ACETATE PH4.6, pH 4.60
Crystal Properties Matthews coefficient Solvent content 4.8 75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.117 α = 90 b = 105.117 β = 90 c = 49.636 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2000-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 35 99.9 0.044 34 7.1 25221
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 100 0.281 7.6 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GU3 1.9 20 23897 1288 99.8 0.173 0.172 0.1866 0.197 RANDOM 24.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.62 -1.31 -2.62 3.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.865 r_dihedral_angle_4_deg 12.944 r_dihedral_angle_3_deg 11.387 r_dihedral_angle_1_deg 6.833 r_scangle_it 3.326 r_scbond_it 2.16 r_angle_refined_deg 1.593 r_angle_other_deg 1.42 r_mcangle_it 1.24 r_mcbond_it 0.717
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.865 r_dihedral_angle_4_deg 12.944 r_dihedral_angle_3_deg 11.387 r_dihedral_angle_1_deg 6.833 r_scangle_it 3.326 r_scbond_it 2.16 r_angle_refined_deg 1.593 r_angle_other_deg 1.42 r_mcangle_it 1.24 r_mcbond_it 0.717 r_symmetry_vdw_other 0.416 r_nbd_refined 0.347 r_nbd_other 0.256 r_symmetry_vdw_refined 0.228 r_metal_ion_refined 0.22 r_xyhbond_nbd_refined 0.179 r_symmetry_hbond_refined 0.154 r_chiral_restr 0.127 r_nbtor_other 0.082 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1252 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling BEAST phasing