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CBM4 structure and function
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ULO PDB ENTRY 1ULO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 1.8M AMMONIUM SULFATE, 3% ISOPROPANOL, pH 5.00
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.634 α = 90 b = 77.634 β = 90 c = 55.63 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMICS MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 93.6 0.082 18 4.3 8313
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 61 0.26 3.6 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ULO 2.3 20 6942 1357 93.7 0.217 0.209 0.2235 0.257 RANDOM 25.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.11 0.21 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.004 r_dihedral_angle_4_deg 19.479 r_dihedral_angle_3_deg 17.892 r_dihedral_angle_1_deg 7.42 r_scangle_it 3.383 r_scbond_it 2.247 r_angle_refined_deg 1.823 r_mcangle_it 1.34 r_mcbond_it 0.74 r_symmetry_vdw_refined 0.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.004 r_dihedral_angle_4_deg 19.479 r_dihedral_angle_3_deg 17.892 r_dihedral_angle_1_deg 7.42 r_scangle_it 3.383 r_scbond_it 2.247 r_angle_refined_deg 1.823 r_mcangle_it 1.34 r_mcbond_it 0.74 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.209 r_chiral_restr 0.125 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1019 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing