☰ Navigation Tabs
Atomic Resolution (0.98A) Structure of Eosinophil-Derived Neurotoxin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HI2 PDB ENTRY 1HI2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.4M SODIUM ACETATE, 0.1M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 1.79 36.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.024 α = 90 b = 57.477 β = 90 c = 42.398 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2001-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.98 40 99.6 0.057 21.67 8.18 74763
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.98 1.02 99.9 0.42 3.7 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1HI2 0.98 10 74606 1031 98.2 0.1159 0.116 0.1687 0.1444 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 17 1029 1279.5
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.163 s_zero_chiral_vol 0.158 s_anti_bump_dis_restr 0.119 s_approx_iso_adps 0.086 s_angle_d 0.034 s_from_restr_planes 0.0339 s_similar_adp_cmpnt 0.024 s_rigid_bond_adp_cmpnt 0.019 s_bond_d 0.012 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1088 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 4
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing CNS phasing SHELX phasing