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Structure of Pseudomonas cellulosa alpha-D-glucuronidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 30MG/ML, 15% PEG3350, 250MM MGCL2, 5MM TRIS PH8.0, 20% ETHYLENE GLYCOL, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.4 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.912 α = 115.18 b = 74.682 β = 93.14 c = 87.587 γ = 109.33
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2001-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.484 20 97.6 0.073 7.1 4.2 235655
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.56 90.4 0.345 1.6 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.48 20 233691 1894 96.8 0.133 0.133 0.1574 0.168 0.1773 RANDOM 10.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.11 -0.16 -0.1 -0.3 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.102 r_dihedral_angle_1_deg 4.919 r_scangle_it 3.724 r_scbond_it 2.577 r_angle_other_deg 2.019 r_mcangle_it 1.833 r_angle_refined_deg 1.589 r_mcbond_it 1.271 r_nbd_refined 0.251 r_symmetry_hbond_refined 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.102 r_dihedral_angle_1_deg 4.919 r_scangle_it 3.724 r_scbond_it 2.577 r_angle_other_deg 2.019 r_mcangle_it 1.833 r_angle_refined_deg 1.589 r_mcbond_it 1.271 r_nbd_refined 0.251 r_symmetry_hbond_refined 0.213 r_symmetry_vdw_other 0.211 r_nbd_other 0.207 r_nbtor_other 0.194 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.151 r_metal_ion_refined 0.123 r_chiral_restr 0.122 r_xyhbond_nbd_other 0.082 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11376 Nucleic Acid Atoms Solvent Atoms 1766 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling