☰ Navigation Tabs
STRUCTURAL DETERMINANTS OF THE NHERF INTERACTION WITH BETA2AR AND PDGFR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I92 PDB ENTRY 1I92
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.24 CITRIC ACID, LITHIUM CHLORIDE, pH 4.24
Crystal Properties Matthews coefficient Solvent content 2.44 49.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.373 α = 90 b = 50.373 β = 90 c = 66.631 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 115 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2001-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 26.48 99.8 0.059 23.4 5.4 8091 -3 18.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.7 0.194 8.4 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1I92 1.9 26.48 7693 372 99.8 0.172 0.171 0.1818 0.186 0.2009 RANDOM 15.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.39 0.78 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.459 r_scangle_it 4.545 r_dihedral_angle_1_deg 3.87 r_scbond_it 2.62 r_mcangle_it 2.041 r_angle_refined_deg 1.609 r_mcbond_it 1.117 r_angle_other_deg 0.708 r_symmetry_vdw_refined 0.284 r_symmetry_vdw_other 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.459 r_scangle_it 4.545 r_dihedral_angle_1_deg 3.87 r_scbond_it 2.62 r_mcangle_it 2.041 r_angle_refined_deg 1.609 r_mcbond_it 1.117 r_angle_other_deg 0.708 r_symmetry_vdw_refined 0.284 r_symmetry_vdw_other 0.25 r_nbd_refined 0.232 r_nbd_other 0.206 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.077 r_xyhbond_nbd_other 0.057 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 682 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing