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Ribonuclease Binase (G Specific Endonuclease) Unliganded Form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 pH 9.00
Crystal Properties Matthews coefficient Solvent content 2.54 51.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.03 α = 90 b = 33.29 β = 119.08 c = 78.7 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG EMBL/DESY, HAMBURG
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 10 96.3 4 28989
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 10 28989 1546 96.3 0.14 0.155 0.176 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.803 r_scbond_it 3.269 r_mcangle_it 2.771 r_dihedral_angle_3_deg 2.555 r_angle_other_deg 2.077 r_mcbond_it 1.822 r_symmetry_vdw_other 0.198 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.177 r_nbd_other 0.154
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.803 r_scbond_it 3.269 r_mcangle_it 2.771 r_dihedral_angle_3_deg 2.555 r_angle_other_deg 2.077 r_mcbond_it 1.822 r_symmetry_vdw_other 0.198 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.177 r_nbd_other 0.154 r_chiral_restr 0.149 r_symmetry_vdw_refined 0.129 r_symmetry_hbond_refined 0.111 r_nbtor_other 0.081 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_gen_planes_other 0.005 r_bond_other_d 0.003 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1726 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling BLANC phasing