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The metzincin's methionine: PrtC M226L mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other PRTC WILDTYPE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PH 6.5, NACL
Crystal Properties Matthews coefficient Solvent content 3.6 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.015 α = 90 b = 102.015 β = 90 c = 121.302 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MSC YALE-MIRRORS 2000-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 100 0.067 14.4 6.1 49768
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 0.399 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PRTC WILDTYPE 2 30 45805 3963 100 0.169 0.197 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.257 r_dihedral_angle_1_deg 5.698 r_scangle_it 4.252 r_scbond_it 2.977 r_mcangle_it 2.438 r_mcbond_it 1.801 r_angle_refined_deg 1.739 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.257 r_dihedral_angle_1_deg 5.698 r_scangle_it 4.252 r_scbond_it 2.977 r_mcangle_it 2.438 r_mcbond_it 1.801 r_angle_refined_deg 1.739 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.147 r_metal_ion_refined 0.115 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3507 Nucleic Acid Atoms Solvent Atoms 386 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing