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xylan-binding module CBM15
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other PARTIAL MODEL (UNPUBLISHED)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.2M NH4OAC,0.1M NA CITRATE PH 5.6, 30% POLYETHYLENE GLYCOL 4000
Crystal Properties Matthews coefficient Solvent content 2.8 56.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.15 α = 90 b = 60.122 β = 102.78 c = 33.107 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2001-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 50 98 0.043 29 3.6 21535 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.69 80 0.33 3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PARTIAL MODEL (UNPUBLISHED) 1.63 50 20424 1109 97.6 0.152 0.15 0.1645 0.177 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.243 r_scbond_it 2.512 r_angle_other_deg 1.726 r_mcangle_it 1.587 r_dihedral_angle_3_deg 1.182 r_mcbond_it 0.871 r_metal_ion_refined 0.447 r_nbd_refined 0.186 r_nbd_other 0.163 r_symmetry_vdw_other 0.15
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.243 r_scbond_it 2.512 r_angle_other_deg 1.726 r_mcangle_it 1.587 r_dihedral_angle_3_deg 1.182 r_mcbond_it 0.871 r_metal_ion_refined 0.447 r_nbd_refined 0.186 r_nbd_other 0.163 r_symmetry_vdw_other 0.15 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.106 r_xyhbond_nbd_refined 0.087 r_nbtor_other 0.085 r_symmetry_vdw_refined 0.037 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1121 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing