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Archaeoglobus fulgidus reverse gyrase complexed with ADPNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GKU PDB ENTRY 1GKU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 15% PEG 1000, 15% ETHYLENE GLYCOL 100 MM CACODYLATE (PH 6),2MM ADPNP
Crystal Properties Matthews coefficient Solvent content 2.44 58.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.41 α = 90 b = 68.69 β = 99.7 c = 134 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 ADSC 2001-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 34 96.7 0.102 5.2 3.3 38400 81
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.35 96.7 0.321 2.3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GKU 3.2 34 38400 1916 96.6 0.256 0.256 0.2469 0.332 RANDOM 75.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.642 -27.593 9.01 -4.367
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 6 c_mcangle_it 4 c_scbond_it 4 c_mcbond_it 3 c_angle_deg 1.3 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 6 c_mcangle_it 4 c_scbond_it 4 c_mcbond_it 3 c_angle_deg 1.3 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16334 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 64
Software Software Software Name Purpose CNS refinement MOSFLM data reduction SCALA data scaling CNS phasing