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EUKARYOTIC DECODING REGION A-SITE RNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 90% H2O/10% D20; 100% D2O 10 mM 6.3 1 atm 298 2 3D_13C-separated_NOESY 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 90% H2O/10% D20; 100% D2O 10 mM 6.3 1 atm 298 3 3D_15N-separated_NOESY 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 90% H2O/10% D20; 100% D2O 10 mM 6.3 1 atm 298 4 4D_13C-separated_NOESY 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 90% H2O/10% D20; 100% D2O 10 mM 6.3 1 atm 298 5 DQF-COSY 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 90% H2O/10% D20; 100% D2O 10 mM 6.3 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing molecular dynamics 682 NOEs, 129 dihedral constraints, 36 Hydrogen bonds X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations,structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 25 Representative Model 12 (n/a)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR 3.83 Brunger 2 structure solution X-PLOR 3.83 Brunger 3 processing VNMR 6.1 4 processing Felix 6.1