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CRYSTAL STRUCTURE OF E.COLI YBCL, A NEW MEMBER OF THE MAMMALIAN PEBP FAMILY
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FJJ 1FJJ E.COLI YBHB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 298 PEG 6000, Hepes, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.425 α = 90 b = 55.531 β = 105.39 c = 60.152 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 25 97.5 0.03 16.1 3.4 96044 16.894
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.81 1.91 89.4 0.088 7.8 3.2 3751
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE-R 1FJJ E.COLI YBHB 1.81 25 28872 2836 97.5 0.1995 0.25423 RANDOM 21.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.3 p_staggered_tor 17.8 p_planar_tor 4 p_scangle_it 3.2 p_mcangle_it 2.46 p_scbond_it 2.18 p_mcbond_it 1.71 p_multtor_nbd 0.24 p_singtor_nbd 0.17 p_xyhbond_nbd 0.14
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.3 p_staggered_tor 17.8 p_planar_tor 4 p_scangle_it 3.2 p_mcangle_it 2.46 p_scbond_it 2.18 p_mcbond_it 1.71 p_multtor_nbd 0.24 p_singtor_nbd 0.17 p_xyhbond_nbd 0.14 p_planar_d 0.036 p_angle_d 0.035 p_bond_d 0.014 p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2501 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling