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STRUCTURE DETERMINATION OF THE FERRICYTOCHROME C2 FROM RHODOPSEUDOMONAS PALUSTRIS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 293 ammonium sulfate, ferricyanide, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.46 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.31 α = 90 b = 71.53 β = 93.52 c = 66.66 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 1999-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 0.087 11 3.7 194662 51959 13.42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 99.7 0.358 3.6 3.7 7539
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2c2c 1.7 50 51970 49259 2648 99.9 0.17775 0.1729 0.21793 0.2068 RANDOM 16.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 15.2 p_transverse_tor 13.5 p_scangle_it 7.076 p_scbond_it 6.245 p_mcangle_it 3.781 p_planar_tor 3.5 p_mcbond_it 2.715 p_multtor_nbd 0.258 p_singtor_nbd 0.167 p_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 15.2 p_transverse_tor 13.5 p_scangle_it 7.076 p_scbond_it 6.245 p_mcangle_it 3.781 p_planar_tor 3.5 p_mcbond_it 2.715 p_multtor_nbd 0.258 p_singtor_nbd 0.167 p_chiral_restr 0.113 p_xyhbond_nbd 0.108 p_planar_d 0.03 p_angle_d 0.025 p_plane_restr 0.021 p_bond_d 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3420 Nucleic Acid Atoms Solvent Atoms 653 Heterogen Atoms 188
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling