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ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARGAMMA-SELECTIVE RETINOID SR11254
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FCY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 290 sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP at 290K
Crystal Properties Matthews coefficient Solvent content 2.2 44.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.789 α = 90 b = 59.789 β = 90 c = 155.688 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 20 99.8 0.042 36 4.93 59004 59004 19.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.38 1.41 99.8 0.362 3.3 4 3852
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R 1FCY 1.38 6 58146 55236 2910 99.9 0.131 0.131 0.13 0.1843 0.158 0.1823 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 24 1935 2200.2
RMS Deviations Key Refinement Restraint Deviation s_torsion_deg 26.38 s_torsion_impr_deg 2.07 s_approx_iso_adps 0.093 s_non_zero_chiral_vol 0.077 s_zero_chiral_vol 0.073 s_similar_adp_cmpnt 0.038 s_angle_d 0.031 s_from_restr_planes 0.0249 s_anti_bump_dis_restr 0.023 s_bond_d 0.013
RMS Deviations Key Refinement Restraint Deviation s_torsion_deg 26.38 s_torsion_impr_deg 2.07 s_approx_iso_adps 0.093 s_non_zero_chiral_vol 0.077 s_zero_chiral_vol 0.073 s_similar_adp_cmpnt 0.038 s_angle_d 0.031 s_from_restr_planes 0.0249 s_anti_bump_dis_restr 0.023 s_bond_d 0.013 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1944 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 76
Software Software Software Name Purpose SHELXL-97 refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing