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ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARGAMMA-SELECTIVE RETINOID BMS184394
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FCY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 290 sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.26 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.887 α = 90 b = 59.887 β = 90 c = 155.176 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 20 99.8 0.052 28.1 4.59 49002 49002 21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.47 1.5 99.8 0.365 3.76 4.1 2411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R 1FCY 1.47 6 48126 45709 2417 99.9 0.1245 0.1245 0.1234 0.1842 0.1671 0.1823 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 16 1936 2205
RMS Deviations Key Refinement Restraint Deviation s_torsion_deg 26.9 s_torsion_impr_deg 1.49 s_approx_iso_adps 0.1 s_non_zero_chiral_vol 0.074 s_zero_chiral_vol 0.056 s_similar_adp_cmpnt 0.039 s_angle_d 0.03 s_from_restr_planes 0.0242 s_anti_bump_dis_restr 0.022 s_bond_d 0.011
RMS Deviations Key Refinement Restraint Deviation s_torsion_deg 26.9 s_torsion_impr_deg 1.49 s_approx_iso_adps 0.1 s_non_zero_chiral_vol 0.074 s_zero_chiral_vol 0.056 s_similar_adp_cmpnt 0.039 s_angle_d 0.03 s_from_restr_planes 0.0242 s_anti_bump_dis_restr 0.022 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1914 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 64
Software Software Software Name Purpose SHELXL-97 refinement CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing