☰ Navigation Tabs
SOLUTION STRUCTURE OF THE NUDIX ENZYME DIADENOSINE TETRAPHOSPHATE HYDROLASE FROM LUPINUS ANGUSTIFOLIUS L.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 CBCANH,CBCA(CO)NH,C(CO)NH_TOCSY,HNCO,(HCA)CO(CA)NH 0.9mM U-15N, 13C; Hydrolase 50mM phosphate buffer, 1.5mM EDTA, 3mM DTT 90% H2O/10% D2O 50mM 6.5 ambient 298 2 HCACO,HCCH-TOCSY,13C-NOESY-HSQC,(HB)CB(CGCD)HD,(HB)CB(CGCDCE)HE,HACAHB,13C_CT_HEQC, 0.9mM U-15N,13C; Hydrolase 50mM phosphate buffer, 1.3mM EDTA, 1.5mM EDTA,3mM DTT 100% D2O 50mM 6.5 ambient 298 3 HNHB,HNHA,15N-TOCSY-HSQC,15N-NOESY-HSQC,15N-IPAP-HSQC 1.2mM U-15N; Hydrolase 50mM phosphate buffer, 1.5mM EDTA, 3mM DTT 90% H2O/10% D2O 50mM 6.5 ambient 298 4 15N-NOESY-HSQC 1.2mM U-15N; Hydrolase 20mM imidazole buffer, 20mM MGCl2 90% H2O/10% D2O 40mM 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 600 3 Varian INOVA 600 4 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics,simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with favorable non-bond energy,structures with the least restraint violations,target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 25 Representative Model 3 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 1.7 Delaglio 2 data analysis XEASY 1.3.13 Bartels 3 refinement DYANA 1.5,1.4 Guentert 4 refinement CNS 0.9 Brunger 5 collection VNMR 6.1 b Varian