Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
ELECTRON MICROSCOPY
Data Collection
Overall
ID #
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1
11.5
Sample
E.COLI 70S RIBOSOME
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
73523
Reported Resolution (Å)
11.5
Resolution Method
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
RECIPROCAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
VECTOR R-FACTOR
Overall B Value
Fitting Procedure
Details
REFINEMENT PROTOCOL--RIGID BODY REFINEMENT DETAILS--ALL COMPONENTS WERE FIT
INTO MAP AS RIGID BODIES USING COORDINATES FROM THE REFERRED SOURCES EXCE ...
REFINEMENT PROTOCOL--RIGID BODY REFINEMENT DETAILS--ALL COMPONENTS WERE FIT
INTO MAP AS RIGID BODIES USING COORDINATES FROM THE REFERRED SOURCES EXCEPT FOR
L1, FOR WHICH ABOUT 15-DEGREE ROTATION WAS INTRODUCED BETWEEN THE TWO DOMAINS;
FITTING OF PROTEIN S17 IS RELATIVELY UNCERTAIN; CONFORMATIONAL CHANGES OF
ANTICODON AND ACCEPTOR REGIONS OF TRNAFMET UPON BINDING TO THE RIBOSOME WERE
NOT MODELED.