☰ Navigation Tabs
The RUNX1 Runt domain at 1.25A resolution: A structural switch and specifically bound chloride ions modulate DNA binding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.4 25 % PEG 3350, 16% GLYCEROL, 130 MM NA CACODYLATE, PH 6.4
Crystal Properties Matthews coefficient Solvent content 2.2 34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.3 α = 90 b = 46.4 β = 92.3 c = 63 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROR 1999-06-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9315,0.9793,0.9795 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 37 97.7 0.06 18.3 8.48 71531
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 78 0.245 2 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.25 25 70348 1047 97.9 0.149 0.149 0.167 RANDOM 16.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.22 0.55 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.144 r_scangle_it 5.405 r_scbond_it 3.818 r_mcangle_it 3.242 r_angle_other_deg 2.514 r_mcbond_it 2.196 r_angle_refined_deg 2.09 r_symmetry_vdw_refined 0.338 r_symmetry_vdw_other 0.334 r_nbd_other 0.276
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.144 r_scangle_it 5.405 r_scbond_it 3.818 r_mcangle_it 3.242 r_angle_other_deg 2.514 r_mcbond_it 2.196 r_angle_refined_deg 2.09 r_symmetry_vdw_refined 0.338 r_symmetry_vdw_other 0.334 r_nbd_other 0.276 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.149 r_symmetry_hbond_refined 0.127 r_nbtor_other 0.095 r_bond_refined_d 0.024 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1911 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing