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E.coli cofactor-dependent phosphoglycerate mutase complexed with vanadate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E58 PDB ENTRY 1E58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 100 MM TRIS-HCL (PH 8.0), 200 MM LI2SO4, 20% PEG 4000, 100 MM NAVO3
Crystal Properties Matthews coefficient Solvent content 2.21 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.249 α = 90 b = 112.142 β = 90 c = 40.948 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 1999-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 30 96.6 0.079 17 4 68073
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.31 99.9 0.401 2.1 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1E58 1.3 30 65738 2061 96.6 0.1591 0.1552 0.1613 0.2134 0.2124 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 4 2210.5
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.087 s_non_zero_chiral_vol 0.066 s_zero_chiral_vol 0.059 s_similar_adp_cmpnt 0.049 s_from_restr_planes 0.0294 s_angle_d 0.029 s_anti_bump_dis_restr 0.016 s_bond_d 0.013 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1945 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 18
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELX phasing