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CYCLOPHILIN 3 FROM C.ELEGANS COMPLEXED WITH AUP(ET)3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other CYCLOPHILIN 3 NATIVE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 HANGING DROP PH5.6 15.5% W/V MPEG 5000, 50 MM SODIUM CITRATE. WELL SOLUTION: 31% MPEG 5000, 100MM SODIUM CITRATE, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.63 60.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.157 α = 90 b = 61.157 β = 90 c = 123.077 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH PT COATED TORROIDAL MIRRO 1999-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.5 SRS PX9.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 35 98.3 0.068 24.03 4.12 20154
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 1 0.253 9.92 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE CYCLOPHILIN 3 NATIVE 1.85 31 19153 1001 93.4 0.1848 0.1848 0.2468 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1526
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.072 s_non_zero_chiral_vol 0.044 s_zero_chiral_vol 0.036 s_from_restr_planes 0.0276 s_angle_d 0.022 s_anti_bump_dis_restr 0.016 s_bond_d 0.006 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1296 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 8
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling SHELXL-97 phasing