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Low Temperature Structure of Hybrid Cluster Protein from Desulfovibrio vulgaris to 1.6A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E1D PDB ENTRY 1E1D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.9 PROTEIN WAS CRYSTALLISED FROM 0.1M MES PH5.9, 60MM MAGNESIUM ACETATE AND 25-30% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.6 52.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.63 α = 90 b = 64.68 β = 90 c = 152.29 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 20 91.3 0.069 5.6 2.5 77446 11.436
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.68 87.7 0.1 6.5 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E1D 1.6 20 72244 3818 90.8 0.16 0.1555 0.184 0.1764 RANDOM 13.443
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.3 p_special_tor 15 p_staggered_tor 11.5 p_planar_tor 3.3 p_scangle_it 2.964 p_scbond_it 2.12 p_mcangle_it 1.79 p_mcbond_it 1.323 p_chiral_restr 0.094 p_planar_d 0.023
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.3 p_special_tor 15 p_staggered_tor 11.5 p_planar_tor 3.3 p_scangle_it 2.964 p_scbond_it 2.12 p_mcangle_it 1.79 p_mcbond_it 1.323 p_chiral_restr 0.094 p_planar_d 0.023 p_angle_d 0.021 p_plane_restr 0.0182 p_bond_d 0.007 p_angle_deg p_hb_or_metal_coord p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4218 Nucleic Acid Atoms Solvent Atoms 630 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing