The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation
SOLUTION NMR - THEORETICAL MODEL
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | HSQC | 10% D2O/90% WATER | 5.9 | 296 | ||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| MAPPING OF THE CHEMICAL SHIFT VARIATIONS | MOLECULAR DYNAMICS CALCULATION USING AMBER FORCE FIELD THESE ARE 3 MODEL STRUCTURES FOR THE COMPLEX OF CYTOCHROME C553 WITH FERREDOXIN I | X-PLOR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | COMBINATION OF NMR SHIFT VARIATION AND A SOFT DOCKING ALGORITHM |
| Conformers Calculated Total Number | |
| Conformers Submitted Total Number | 3 |
| Representative Model | 2 (n/a) |
| Additional NMR Experimental Information | |
|---|---|
| Details | HETERONUCLEAR EXPERIMENTS ON 15N-LABELED FERREDOXIN AND CYTOCHROME, CHEMICAL SHIFT VARIATION ANALYSIS |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR | 3.851 | BRUNGER |
