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A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB NDB ID ADJ043
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 2-MPD, CACODYLATE, SPERMINE, MGCL2, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.87 34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.2 α = 90 b = 42.656 β = 90 c = 49.315 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD CUSTOM-MADE 1999-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 20 98.7 0.067 37.3 11.7 10433 10433 22.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 91.7 0.092 23.8 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS A POSTERIORI 1.4 20 10433 10433 519 98.7 0.195 0.193 0.193 0.1831 0.242 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 534
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.07 s_similar_adp_cmpnt 0.032 s_angle_d 0.027 s_bond_d 0.011 s_anti_bump_dis_restr 0.006 s_similar_dist s_zero_chiral_vol s_non_zero_chiral_vol s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 410 Solvent Atoms 96 Heterogen Atoms 28
Software Software Software Name Purpose d*TREK data scaling HKL-2000 data reduction X-PLOR model building SHELXL-97 refinement d*TREK data reduction HKL-2000 data scaling X-PLOR phasing