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PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2,4,5-TRISPHOSPHATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ISD PDB ENTRY 1ISD
Crystallization Crystal Properties Matthews coefficient Solvent content 4.62 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 397.13 α = 90 b = 397.13 β = 90 c = 397.13 γ = 90
Symmetry Space Group F 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MARRESEARCH 1995-03-28 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID2 ESRF ID2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER FREE R PDB ENTRY 1ISD 2.8 10 58250 58250 2285 90.9 0.21 0.1942 0.26 0.2315 SHELLS
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 18.476 t_it 3.03 t_angle_deg 1.583 t_nbd 0.097 t_bond_d 0.019 t_trig_c_planes 0.017 t_gen_planes 0.015 t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8522 Nucleic Acid Atoms Solvent Atoms 402 Heterogen Atoms 62
Software Software Software Name Purpose CCP4 model building TNT refinement MOSFLM data reduction CCP4 phasing