1D6G
MOLECULAR COMPLEX OF CHOLECYSTOKININ-8 AND N-TERMINUS OF THE CHOLECYSTOKININ A RECEPTOR BY NMR SPECTROSCOPY
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.6mM CCK-A_R(1-47), 171 mM DPC-d38 | 90% H2O/10% D2O | 6.5 | ambient | 285 | ||
2 | 2D NOESY | 1.5mM CCK-8, 137mM DPC-d38 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
3 | 2D NOESY | 1.6mM CCK-A-R(1-47) + 3mM CCK-8, 171 mM DPC-d38 | 100% D2O or 90% H2O, 10% D2O | 6.5 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 500 |
2 | Bruker | AVANCE DRX | 600 |
3 | Varian | UNITY | 750 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics | The structures of CCK-A-R(1-47) and CCK-8 were calculated separately. The complex was calculated using intra- and intermolecular NOEs using simulated annealing and molecular dynamics calculations. The calculations utilized explicit solvent, as a decane/water simulation cell. | GROMACS |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | 90 |
Conformers Submitted Total Number | 1 |
Representative Model | (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | GROMACS | 1.6 | van der Spoel, D.; van Buuren, A.R.; Apol, E.; Meulenhoff, P.J.; Tielman, D.P.; Sijbers, A.L.T.M.; van Drunen, R.; Berendsen, H.J.C. |
2 | structure solution | Distance Geometry | home written | Mierke, D.F. |