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M INTERMEDIATE STRUCTURE OF THE WILD TYPE BACTERIORHODOPSIN IN COMBINATION WITH THE GROUND STATE STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 CUBIC LIPID PHASE 2.5M PHOSPHATE, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.08 α = 90 b = 61.08 β = 90 c = 110.4 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 20 97.2 8.2 12.05 2 10792 22.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 99.4 32.8 3.4 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R VALUE, MAXIMUM LIKELIHOOD 2.25 13 1 10756 587 97.5 0.167 0.167 0.236 SHELLS 22.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.907 0.123 0.907 -1.814
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 1.93 c_scbond_it 1.717 c_mcangle_it 1.45 c_angle_d 1.32 c_mcbond_it 1.106 c_bond_d 0.0096 c_bond_d_na c_bond_d_prot c_angle_d_na c_angle_d_prot
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 1.93 c_scbond_it 1.717 c_mcangle_it 1.45 c_angle_d 1.32 c_mcbond_it 1.106 c_bond_d 0.0096 c_bond_d_na c_bond_d_prot c_angle_d_na c_angle_d_prot c_angle_deg c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3670 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 406
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling