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NMR STRUCTURE OF SRP RNA DOMAIN IV
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5 6.5 AMBIENT 288 2 3D_13C-SEPARATED_NOESY 0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5 6.5 AMBIENT 288 3 DQF-COSY 0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5 6.5 AMBIENT 288 4 TOCSY 0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5 6.5 AMBIENT 288 5 3D HCCH-TOCSY 0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5 6.5 AMBIENT 288 6 3D HCCH-COSY 0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5 6.5 AMBIENT 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITYPLUS 600
NMR Refinement Method Details Software TORSION ANGLE DYNAMICS, RESTRAINED MOLECULAR DYNAMICS, COMPLETE RELAXATION MATRIX ANALYSIS 16.4 DISTANCE RESTRAINTS/RESIDUE Sparky
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Additional NMR Experimental Information Details G- AND A-SINGLE NUCLEOTIDE ISOTOPE LABELED SAMPLES WERE USED BESIDES A UNIFORMLY LABELED RNA
Computation: NMR Software # Classification Version Software Name Author 1 data analysis Sparky 92 D.KNELLER, T.GODDARD 2 iterative matrix relaxation MARDIGRAS 92 HE LIU, B.BORGIAS, M.TONELLI 3 refinement DYANA 1.4 P. GUENTERT 4 structure solution Amber 4.1 D.A. PEARLMAN ET AL. 5 data analysis Curves 3.0 R. LAVERY