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AMINOPEPTIDASE FROM STREPTOMYCES GRISEUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XJO PDB ENTERY 1XJO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 16% PEG 4K, 0.1 M SODIUM ACETATE PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.34 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.75 α = 90 b = 61.75 β = 90 c = 146.15 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MAR scanner 300 mm plate MIRROR 1997-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 32 94 0.045 0.045 13 4 37375 17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.58 1.61 63.2 0.141 0.141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT PDB ENTERY 1XJO 1.58 32 37354 3745 94 0.144 0.144 0.171 RANDOM 19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 1.14 -2.28
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.6 c_scangle_it 4.58 c_scbond_it 3.44 c_mcangle_it 2.12 c_angle_deg 1.9 c_mcbond_it 1.37 c_improper_angle_d 1.27 c_bond_d 0.019 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.6 c_scangle_it 4.58 c_scbond_it 3.44 c_mcangle_it 2.12 c_angle_deg 1.9 c_mcbond_it 1.37 c_improper_angle_d 1.27 c_bond_d 0.019 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CCP4 model building CNS refinement CCP4 phasing CNS phasing