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ATOMIC RESOLUTION CRYSTAL STRUCTURE ANALYSIS OF NATIVE DEOXY AND CO MYOGLOBIN FROM SPERM WHALE AT ROOM TEMPERATURE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MBN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.9 PROTEIN WAS CRYSTALLIZED FROM AMMONIUM SULPHATE, 0.1 M POTASSIUM PHOSPHATE, pH 5.9
Crystal Properties Matthews coefficient Solvent content 1.96 37.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.91 α = 90 b = 31.04 β = 105.53 c = 64.73 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 IMAGE PLATE MARRESEARCH MIRRORS 1998-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 20 96.3 0.052 23.8 4.4 46002
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.15 1.2 95.3 0.28 3.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 4MBN 1.15 12 46002 96.3 0.124 0.124 0.1287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 40 1156.6 1422.7
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.102 s_similar_adp_cmpnt 0.088 s_non_zero_chiral_vol 0.086 s_zero_chiral_vol 0.069 s_angle_d 0.031 s_similar_dist 0.025 s_anti_bump_dis_restr 0.02 s_bond_d 0.015 s_rigid_bond_adp_cmpnt 0.005 s_from_restr_planes
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1303 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 58
Software Software Software Name Purpose SHELXL refinement DENZO data reduction SCALEPACK data scaling