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THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 NOT DEPOSITED IN PDB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 PEG 8,000 25%, NACL 100 MM, SODIUM ACETATE 50 MM, PH 4, T=28C
Crystal Properties Matthews coefficient Solvent content 3.4 45.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.89 α = 90 b = 86.89 β = 90 c = 99.01 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 24.7 96 0.06 0.09 3 8469
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 NOT DEPOSITED IN PDB 2.1 24.7 8469 8075 96 0.1798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_it 4.25 t_angle_deg 2.62 t_nbd 0.067 t_bond_d 0.018 t_gen_planes 0.018 t_trig_c_planes 0.017 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1109 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing TNT refinement