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WILD-TYPE PLASTOCYANIN FROM SILENE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PCY PDB ENTRY 1PCY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 53% SATURATED AMMONIUM SULFATE, 0.1 M SODIUM ACETATE BUFFER, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.64 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.6 α = 90 b = 76.6 β = 90 c = 65.5 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 285 IMAGE PLATE RIGAKU 1994-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 94.2 0.06 3.8 11515
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PCY 2 20 10497 568 94 0.189 0.197 0.1732 0.225 0.2012 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 20.9 p_planar_tor 5 p_scangle_it 3.622 p_mcangle_it 2.957 p_scbond_it 2.331 p_mcbond_it 1.905 p_chiral_restr 0.161 p_planar_d 0.032 p_angle_d 0.016 p_bond_d 0.012
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 20.9 p_planar_tor 5 p_scangle_it 3.622 p_mcangle_it 2.957 p_scbond_it 2.331 p_mcbond_it 1.905 p_chiral_restr 0.161 p_planar_d 0.032 p_angle_d 0.016 p_bond_d 0.012 p_angle_deg p_hb_or_metal_coord p_plane_restr p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1462 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 2
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling