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 1BYJ | pdb_00001byj

GENTAMICIN C1A A-SITE COMPLEX


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 10 mM SODIUM PHOSPHATE6.4308
23D 10 mM SODIUM PHOSPHATE6.4308
34D-NOESY 10 mM SODIUM PHOSPHATE6.4308
4COSY 10 mM SODIUM PHOSPHATE6.4308
5TOCSY 10 mM SODIUM PHOSPHATE6.4308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITY+ 500500
2BrukerDMX750750
NMR Refinement
MethodDetailsSoftware
simulated annealingDiscover
NMR Ensemble Information
Conformer Selection CriteriaLEAST RESTRAINT VIOLATION
Conformers Calculated Total Number38
Conformers Submitted Total Number38
Representative Model2 (n/a)
Additional NMR Experimental Information
DetailsA TOTAL OF 326 RNA, 7 GENTAMICIN AND 46 GENTAMICIN-RNA RESTRAINTS WERE USED. 111 EXPERIMENTAL DIHEDRAL RESTRAINTS WERE USED. FOR 38 THE FINAL STRUCTURES DEVIATIONS FROM EXPERIMENTAL RESTRAINTS ARE: RMSD NMR DISTANCE RESTRAINTS (379) (A): 0.0249 (0.0002) RMSD NMR DIHEDRAL RESTRAINTS (111) (DEG): 0.0127 (0.0016) DEVIATIONS FROM DEALIZED GEOMETRY (CVFF FORCEFIELD) RMSD BONDS (A): 0.0260 ( 0.0000) RMSD ANGLES (DEG): 0.0621 (0.0001) RMSD IMPROPERS (DEG): 0.0485 ( 0.0025) HEAVY ATOM RMS DEVIATIONS OF AVERAGE, MINIMIZED STRUCTURE FROM BEST- FIT SUPERPOSITION OF THE 38 FINAL STRUCTURES RMSD ALL RNA + GENTAMICIN (A): 0.89
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementDiscoverBIOSYM
2structure solutionNMR ARCHITECT
3structure solutionDiscoverBIOSYM