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MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 289 HANGING DROP, 2.2M NACL, 0.4M NA/K PHOSPHATE, 10MM DTT 0.1M MES PH 7.1, 15% GLYCEROL, 16DEGREES, MOLAR RATIO OF PEPTIDE TO PROTEIN 3:1, vapor diffusion - hanging drop, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4.98 75.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.26 α = 90 b = 125.26 β = 90 c = 73.79 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC MIRROR 1998-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 22 99.8 0.101 0.101 23.5 15.8 18413 4 78
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.85 99.8 0.9999999 0.99999 2.2 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BW8 2.7 22 18413 801 98.4 0.282 0.263 0.2338 0.325 0.2803 RANDOM 78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.1 p_staggered_tor 17.6 p_scangle_it 5.3 p_scbond_it 3.8 p_mcangle_it 3.1 p_mcbond_it 1.8 p_planar_tor 1.7 p_multtor_nbd 0.252 p_singtor_nbd 0.198 p_xyhbond_nbd 0.189
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.1 p_staggered_tor 17.6 p_scangle_it 5.3 p_scbond_it 3.8 p_mcangle_it 3.1 p_mcbond_it 1.8 p_planar_tor 1.7 p_multtor_nbd 0.252 p_singtor_nbd 0.198 p_xyhbond_nbd 0.189 p_chiral_restr 0.122 p_angle_d 0.04 p_planar_d 0.038 p_bond_d 0.012 p_plane_restr 0.0025 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2093 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling