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OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IUZ PDB ENTRY 1IUZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.3 pH 5.3
Crystal Properties Matthews coefficient Solvent content 2.7 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.1 α = 90 b = 43.1 β = 90 c = 56.9 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 300 DIFFRACTOMETER WEISSENBERG 1997-12-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.1 0.071 4.4 8058
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 97.3 0.123
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IUZ 1.9 10 7977 785 99 0.151 0.167 0.1546 0.187 RANDOM 17.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.5 p_special_tor 15 p_planar_tor 3.4 p_multtor_nbd 0.244 p_chiral_restr 0.195 p_plane_restr 0.184 p_singtor_nbd 0.181 p_planar_d 0.035 p_angle_d 0.027 p_bond_d 0.016
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 16.5 p_special_tor 15 p_planar_tor 3.4 p_multtor_nbd 0.244 p_chiral_restr 0.195 p_plane_restr 0.184 p_singtor_nbd 0.181 p_planar_d 0.035 p_angle_d 0.027 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_transverse_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 693 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 1
Software Software Software Name Purpose X-PLOR model building REFMAC refinement X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing