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PROBING THE SUBSTRATE SPECIFICITY OF THE INTRACELLULAR BRAIN PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WAB PAF ACETYLHYDROLASE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 pH 6.8
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.056 α = 90 b = 81.056 β = 90 c = 72.622 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MSC MIRRORS 1997-11-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 92 0.041 18.3 10.7 10257
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 87.6 0.161
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PAF ACETYLHYDROLASE 2.4 8 16725 1672 92 0.205 0.264 RANDOM 35.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_plane_restr 10 p_multtor_nbd 0.245 p_singtor_nbd 0.197 p_angle_d 0.031 p_bond_d 0.01 p_angle_deg p_planar_d p_hb_or_metal_coord p_mcbond_it p_mcangle_it
RMS Deviations Key Refinement Restraint Deviation p_plane_restr 10 p_multtor_nbd 0.245 p_singtor_nbd 0.197 p_angle_d 0.031 p_bond_d 0.01 p_angle_deg p_planar_d p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_chiral_restr p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1689 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling