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PEPTIDE DEFORMYLASE AS NI2+ CONTAINING FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ICJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 SEE: D.GROCHE,A.BECKER,I.SCHLICHTING,W.KABSCH, S.SCHULTZ,A.F.V.WAGNER (1998)
BIOCHEM.BIOPHYS.RES.COMM. 246, 342, pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.82 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.4 α = 90 b = 64 β = 123 c = 84.5 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 AREA DETECTOR SIEMENS-NICOLET X100 FRANCKS DUBBLE-MIRROR OPTICS 1997-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ELLIOTT GX-18
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 97.2 0.086 13.3 4.1 21929 44.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 94.4 0.329 2.42 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ICJ 2.5 6 19733 1973 97.5 0.203 0.203 0.2048 0.272 RANDOM 37.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.1 x_scangle_it 4.24 x_scbond_it 2.72 x_mcangle_it 2.47 x_improper_angle_d 2.27 x_mcbond_it 1.49 x_angle_deg 1.3 x_bond_d 0.013 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.1 x_scangle_it 4.24 x_scbond_it 2.72 x_mcangle_it 2.47 x_improper_angle_d 2.27 x_mcbond_it 1.49 x_angle_deg 1.3 x_bond_d 0.013 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4038 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 16
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement XDS data reduction XSCALE data scaling X-PLOR phasing