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NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.77 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.565 α = 90 b = 106.565 β = 90 c = 63.578 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU RAXIS IIC 1996-06-03 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 91.78 87.3 0.054 13.9 3.8 23309 2 31.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.25 78.7 0.182 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 10 20280 1065 77.1 0.18 0.17 0.226 RANDOM 23.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 28.5 p_staggered_tor 23.4 p_planar_tor 5.1 p_scangle_it 2.321 p_mcangle_it 1.904 p_scbond_it 1.476 p_mcbond_it 1.186 p_multtor_nbd 0.238 p_singtor_nbd 0.184 p_chiral_restr 0.14
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 28.5 p_staggered_tor 23.4 p_planar_tor 5.1 p_scangle_it 2.321 p_mcangle_it 1.904 p_scbond_it 1.476 p_mcbond_it 1.186 p_multtor_nbd 0.238 p_singtor_nbd 0.184 p_chiral_restr 0.14 p_xyhbond_nbd 0.138 p_angle_d 0.03 p_planar_d 0.028 p_plane_restr 0.023 p_bond_d 0.009 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2544 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 2
Software Software Software Name Purpose AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling