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MAC-1 I DOMAIN CADMIUM COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IDN CD11B I DOMAIN METAL FREE PDB ENTRY 1IDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 CRYSTALS WERE GROWN BY VAPOR DIFFUSION ON SITTING DROP BRIDGES. THE WELL MIX OF 20-24% PEG6000 BUFFERED WITH 100 MM NA ACETATE PH 5.0 WAS MIXED 1:1 WITH 3 UL OF I DOMAIN PROTEIN (20-30 MG/ML, 50 MM HEPES PH 7.0, 0.025% NA AZIDE). CRYSTALS WERE STABLIZED IN 10MM CDCL2, 100 MM NA ACETATE 5.0, 26% PEG6000 FOR DATA COLLECTION., vapor diffusion - sitting drop
Crystal Properties Matthews coefficient Solvent content 2.48 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.42 α = 90 b = 122.39 β = 90 c = 75.36 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 AREA DETECTOR SIEMENS 1994-08-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 10 43.9 0.097 10.6 3.1 7424 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.65 2.91 43.3 0.192 3.1 1.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS TO KNOWN PDB ENTRY 1IDN CD11B I DOMAIN METAL FREE PDB ENTRY 1IDN 2.7 10 2 8618 43.9 0.175 0.175 10.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21 p_staggered_tor 9.1 p_planar_tor 2.2 p_scangle_it 1.341 p_mcangle_it 0.964 p_scbond_it 0.796 p_mcbond_it 0.552 p_multtor_nbd 0.259 p_xyhbond_nbd 0.256 p_chiral_restr 0.201
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 21 p_staggered_tor 9.1 p_planar_tor 2.2 p_scangle_it 1.341 p_mcangle_it 0.964 p_scbond_it 0.796 p_mcbond_it 0.552 p_multtor_nbd 0.259 p_xyhbond_nbd 0.256 p_chiral_restr 0.201 p_singtor_nbd 0.197 p_angle_d 0.036 p_planar_d 0.034 p_bond_d 0.018 p_plane_restr 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3059 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 2
Software Software Software Name Purpose PROLSQ refinement XENGEN data reduction XENGEN data scaling